Â鶹ÊÓƵ

Introduction to ImageJ/Fiji and Writing macros in ImageJ

27 and 28 July 2026

• Place - 
• Organiser - Dr K.R. Straatman
• Registration deadline -19 July 2026

ImageJ is a public domain image processing and analysis software package written in Java. It is and used by many scientists around the world. There is a very active ImageJ community and ImageJ is continuously improved.  (Fiji stands for Fiji is Just ImageJ) is a distribution of ImageJ focused on 3D image reconstruction and analysis. The workshop will focus on Fiji, but you can use plain ImageJ as well. The attendees will learn how to use ImageJ/Fiji to analyse features in microscope images but the used techniques are widely applicable to other types of images.

Registration forms

• Applicants from the Â鶹ÊÓƵ - Download the form (PDF, 80kb)
• External applicants - Download the form (PDF, 65kb)

Who should attend?

The workshops are aimed at scientists and non‑scientists who are interested in using ImageJ/Fiji for image analysis. They are open to both internal and external participants, including those from industry and business, who want to use, or have already started using ImageJ/Fiji for image analysis but need some guidance to make the best use of the software.
During the workshops, participants will receive an introduction to using ImageJ/Fiji for digital image processing, with a primary focus on biological examples. No prior experience with ImageJ/Fiji is required; however, a basic understanding of how to use a computer or laptop is an advantage.

Please be aware, participants have to bring their own laptop!

Content and program

Introduction to ImageJ/Fiji

A one day introduction workshop for ImageJ/Fiji. The aim of this day is to familiarise you with the use of the ImageJ/Fiji menus, plugins and macros for digital image processing and where to find information about their use. During this day, there will be lectures and hands-on sessions on the basics of ImageJ/Fiji and we will have a closer look at a selection of macros and plugins.

• 9.30am - 10.30am: Introduction lecture
• 10.30am - 11.00am: Coffee/tea
• 11.00am - 12.30pm: Hands-on session
• 12.30pm - 1.30pm: Lunch
• 1.30pm - 2.30pm: Plugins lecture
• 2.30pm - 3.30pm: Hands-on session
• 3.30pm - 4.00pm: Coffee/tea
• 4.00pm - 5.00pm: Hands-on session

Writing macros in ImageJ

The second day is a workshop introducing the ImageJ macro language, which can be used for automated image analysis in ImageJ/Fiji. The macro language is a powerful tool to analyse large data sets. During this workshop, we will see how to select a directory, how to write a macro to analyse the data and how to reuse code. This means that during this workshop, you will write code using the macro language. However, programming knowledge is not required to follow the workshop.

• 9.30am - 10.30am: Introduction to macros
• 10.30am - 11.00am: Coffee/tea
• 11.00am - 12.30pm: Hands-on session
• 12.30pm - 1.30pm: Lunch
• 1.30pm - 3.00pm: Hands-on session
• 3.00pm - 3.30pm: Coffee/tea
• 3.30pm - 5.00pm: Hands-on session

Workshop fees

Fees include lecture notes, refreshments and lunches.

Travel costs and accommodation are not covered by the workshop fee and must be organized individually by the participants.

Payment methods

Participants from the Â鶹ÊÓƵ have to use an internal charge code for payments. For external participants we only accept credit card payments via for the workshop fee. Once the registration form has been submitted you will receive a link to make use of the shop. For billing purpose, you will be asked to create an account with . Payment has to be received before the start of the workshop.

Cancellations

A 10% cancellation fee will apply if a cancellation is received before 19 July 2026. By cancellation after this deadline a charge of £40/day will be in place. Substitutions can be made, but please inform us in writing.

Quick links

• Download the application form for applicants from the Â鶹ÊÓƵ (PDF, 80kb)
• Download the application form for external applicants (PDF, 65kb)
• Download the workshop poster (PDF, 961kb)

The workshops are organized by Dr Kees Straatman (krs5@le.ac.uk), manager of the Advanced Imaging Facility, part of the Core Biotechnology Services from the College of Life Sciences, Â鶹ÊÓƵ.